<a id="top"></a> <a name="linux"></a> EIVE On-Board Software
======

# General information

Target systems:

* OBC with Linux OS
   * Xiphos Q7S
   * Based on Zynq-7020 SoC (xc7z020clg484-2)
      * Dual-core ARM Cortex-A9
      * 766 MHz
      * Artix-7 FPGA (85K pogrammable logic cells)
   * Datasheet at https://eive-cloud.irs.uni-stuttgart.de/index.php/apps/files/?dir=/EIVE_IRS/Arbeitsdaten/08_Used%20Components/Q7S&fileid=340648
   * Also a lot of information about the Q7S can be found on
     the [Xiphos Traq Platform](https://trac2.xiphos.ca/eive-q7).
   * Linux OS built with Yocto 2.5
   * Linux Kernel https://github.com/XiphosSystemsCorp/linux-xlnx.git . EIVE version can be found
     [here](https://egit.irs.uni-stuttgart.de/eive/q7s-linux-xlnx) . Pre-compiled files can be
     found [here](https://eive-cloud.irs.uni-stuttgart.de/index.php/apps/files/?dir=/EIVE_IRS/Software/q7s-linux-components&fileid=777299).
   * Q7S base project can be found [here](https://egit.irs.uni-stuttgart.de/eive/q7s-base)
* Host System
	* Generic software components which are not dependant on hardware can also
	be run on a host system. All host code is contained in the `bsp_hosted` folder
	* Tested for Linux (Ubuntu 20.04) and Windows 10
* Raspberry Pi
    * EIVE OBC can be built for Raspberry Pi as well (either directly on Raspberry Pi or by installing a cross compiler)
	
The steps in the primary README are related to the main OBC target Q7S.
The CMake build system can be used to generate build systems as well (see helper scripts in `cmake/scripts`:

- Linux (Raspberry Pi): See special section below.
- Linux Host:  Uses the `bsp_hosted` BSP folder and the CMake Unix Makefiles generator.
- Windows Host: Uses the `bsp_hosted` BSP folder, the CMake MinGW Makefiles generator and MSYS2.

# Setting up development environment

## Installing Vivado the the Xilinx development tools

It's also possible to perform debugging with a normal Eclipse installation by installing 
the TCF plugin and downloading the cross-compiler as specified in the section below.

* Install Vivado 2018.2 and Xilinx SDK from https://www.xilinx.com/support/download/index.html/content/xilinx/en/downloadNav/vivado-design-tools/archive.html.
  Install the Vivado Design Suite - HLx Editions - 2018.2  Full Product Installation instead of the updates. It is recommended to use the installer.
  
* Install settings. In the Devices selection, it is sufficient to pick SoC &rarr; Zynq-7000: <br>

<img src="https://egit.irs.uni-stuttgart.de/eive/eive-obsw/raw/branch/develop/doc/img/vivado-edition.png" width="50%"> <br>

<img src="https://egit.irs.uni-stuttgart.de/eive/eive-obsw/raw/branch/mueller/master/doc/img/vivado-hl-design.png" width="50%"> <br>

<img src="https://egit.irs.uni-stuttgart.de/eive/eive-obsw/raw/branch/mueller/master/doc/img/xilinx-install.PNG" width="50%"> <br>

* For supported OS refer to https://www.xilinx.com/support/documentation/sw_manuals/xilinx2018_2/ug973-vivado-release-notes-install-license.pdf . 
  Installation was tested on Windows and Ubuntu 21.04.
* Add path of linux cross-compiler to permanent environment variables (`.bashrc` file in Linux): 
  `<XilinxInstallation>\SDK\2018.2\gnu\aarch32\nt\gcc-arm-linux-gnueabi\bin` 
  or set up path each time before debugging.

### Installing on Linux - Device List Issue

When installing on Ubuntu, the installer might get stuck at the `Generating installed device list`
step. When this happens, you can kill the installation process (might be necessara to kill a process
twice) and generate this list manually with the following commands, according to 
[this forum entry](https://forums.xilinx.com/t5/Installation-and-Licensing/Vivado-2018-3-Final-Processing-hangs-at-Generating-installed/m-p/972114#M25861).

1. Install the following library
   ```sh
   sudo apt install libncurses5
   ```

2. ```sh 
   sudo <installRoot>/Vivado/2018.2/bin/vivado -nolog -nojournal -mode batch -source 
   <installRoot>/.xinstall/Vivado_2018.2/scripts/xlpartinfo.tcl -tclargs 
   <installRoot>/Vivado/2018.2/data/parts/installed_devices.txt
   ```

For Linux, you can also download a more recent version of the
[Linaro 8.3.0 cross-compiler](https://developer.arm.com/tools-and-software/open-source-software/developer-tools/gnu-toolchain/gnu-a/downloads)
from [here](https://developer.arm.com/-/media/Files/downloads/gnu-a/8.3-2019.03/binrel/gcc-arm-8.3-2019.03-x86_64-arm-linux-gnueabihf.tar.xz?revision=e09a1c45-0ed3-4a8e-b06b-db3978fd8d56&la=en&hash=93ED4444B8B3A812B893373B490B90BBB28FD2E3)

## Installing toolchain without Vivado

You can download the toolchains for Windows and Linux
[from the EIVE cloud](https://eive-cloud.irs.uni-stuttgart.de/index.php/apps/files?dir=/EIVE_IRS/Software/tools&fileid=831898).

If `wget` is available (e.g. MinGW64), you can use the following command to download the
toolchain for Windows

```sh
wget https://eive-cloud.irs.uni-stuttgart.de/index.php/s/rfoaistRd67yBbH/download/gcc-arm-linux-gnueabi-win.zip
```

or the following command for Linux (could be useful for CI/CD)

```sh
wget https://eive-cloud.irs.uni-stuttgart.de/index.php/s/2Fp2ag6NGnbtAsK/download/gcc-arm-linux-gnueabi.tar.gz
```

## Installing CMake and MSYS2 on Windows

1. Install [MSYS2](https://www.msys2.org/) and [CMake](https://cmake.org/download/) first.

2. Open the MinGW64 console. It is recommended to set up aliases in `.bashrc` to navigate to the 
   software repository quickly
  
3. Run the following commands in MinGW64

   ```sh
   pacman -Syu
   ```
   
   It is recommended to install the full base development toolchain
   
   ```sh
   pacman -S base-devel
   ```
   
   It is also possible to only install required packages
   
   ```sh
   pacman -S mingw-w64-x86_64-cmake mingw-w64-x86_64-make mingw-w64-x86_64-gcc mingw-w64-x86_64-gdb python3
   ```
   
## Installing CMake on Linux

1. Run the following command

   ```sh
   sudo apt-get install cmake
   ```` 
   
## Getting the Q7S system root

It is necessary to copy the Q7S system root to your local development machine for libraries
like `libgpio`. You can find the system root for the Q7S, the Raspberry Pi and the
Beagle Bone Black for download here
[here](https://eive-cloud.irs.uni-stuttgart.de/index.php/apps/files/?dir=/EIVE_IRS/Software/rootfs&fileid=831849). 
Download it and unzip it somewhere in the Xilinx installation folder.
You can use the following command if `wget` can be used or for CI/CD:

```
wget https://eive-cloud.irs.uni-stuttgart.de/index.php/s/agnJGYeRf6fw2ci/download/cortexa9hf-neon-xiphos-linux-gnueabi.tar.gz
```

Then, create a new environmental variables `Q7S_SYSROOT` and set it to the local system root path.

# Building the software with CMake

When using Windows, run theses steps in MSYS2.

1. Clone the repository with

   ```sh
   git clone https://egit.irs.uni-stuttgart.de/eive/eive_obsw.git
   ```

2. Update all the submodules

   ```sh
   git submodule init
   git submodule sync
   git submodule update
   ```

3. Ensure that the cross-compiler is working with `arm-linux-gnueabihf-gcc --version`.
   It is recommended to run the shell script `win_path_helper_xilinx_tools.sh` in `cmake/scripts/Q7S`
   or to set up the [PATH and the CROSS_COMPILE variable permanently](https://unix.stackexchange.com/questions/26047/how-to-correctly-add-a-path-to-path)
   in the `.profile` file.

4. Run the CMake configuration to create the build system in a `build-Debug-Q7S` folder.
   Add `-G "MinGW Makefiles` in MinGW64 on Windows.

   ```sh
   mkdir build-Debug-Q7S && cd build-Debug-Q7S
   cmake -DTGT_BSP="arm/q7s" -DCMAKE_BUILD_TYPE=Debug -DOS_FSFW=linux ..
   cmake --build . -j
   ```

   You can also use provided shell scripts to perform these commands

   ```sh
   cd cmake/scripts/Q7S
   ./make_debug_cfg.sh
   cd ../../..
   ```

   This will invoke a Python script which in turn invokes CMake with the correct
   arguments to configure CMake for Q7S cross-compilation.
   
   You can build the hosted variant of the OBSW by replacing `-DOS_FSFW=linux` with 
   `-DOS_FSFW=host`. There are also different values for `-DTGT_BSP` to build for the Raspberry Pi
   or the Beagle Bone Black: `arm/raspberrypi` and `arm/beagleboneblack`.
   
5. Build the software with
   ```sh
   cd Debug
   cmake --build . -j
   ```
   
## Setting up default Eclipse for Q7S projects - TCF agent

The [TCF agent](https://wiki.eclipse.org/TCF) can be used to perform remote debugging on the Q7S.

1. Install the TCF agent plugin in Eclipse from the [releases](https://www.eclipse.org/tcf/downloads.php). Go to Help &rarr; Install New Software and use the download page, for example https://download.eclipse.org/tools/tcf/releases/1.6/1.6.2/ to search for the plugin and install it.

2. Go to Window &rarr; Perspective &rarr; Open Perspective and open the **Target Explorer Perspective**. 
   Here, the Q7S should show up if the local port forwarding was set up as explained previously. Please note that you have to connect to `localhost` and port `1534` with port forwaring set up.
   
3. A launch configuration was provided, but it might be necessary to adapt it for your own needs. Alternatively:

 - Create a new **TCF Remote Application** by pressing the cogs button at the top or going to Run &rarr; Debug Configurations &rarr; Remote Application and creating a new one there. 

 - Set up the correct image in the main tab (it might be necessary to send the image to the Q7S manually once) and file transfer properties

 - It is also recommended to link the correct Eclipse project. 

After that, comfortable remote debugging should be possible with the Debug button.

A build configuration and a shell helper script has been provided to set up the path variables and 
build the Q7S binary on Windows, but a launch configuration needs to be newly created because the 
IP address and path settings differ from machine to machine.

## Building in Xilinx SDK 2018.2

1. Open Xilinx SDK 2018.2
2. Import project
	* File &rarr; Import &rarr; C/C++ &rarr; Existing Code as Makefile Project
3. Set build command. Replace \<target\> with either debug or release.
	* When on Linux right click project &rarr; Properties &rarr; C/C++ Build &rarr; Set build command to `make <target>  -j`
		* -j causes the compiler to use all available cores
		* The target is used to either compile the debug or the optimized release build.
	* On windows create a make target additionally (Windows &rarr; Show View &rarr; Make Target)
		* Right click eive_obsw &rarr; New
		* Target name: all
		* Uncheck "Same as the target name"
		* Uncheck "Use builder settings"
		* As build command type: `cmake --build .`
		* In the Behaviour tab, you can enable build acceleration
4. Run build command by double clicking the created target or by right clicking
   the project folder and selecting Build Project.

## TCF-Agent 

1. On reboot, some steps have to be taken on the Q7S. Set static IP address and netmask

	```sh
    ifconfig eth0 192.168.133.10
    ifconfig eth0 netmask 255.255.255.0
    ``` 
	
2. `tcfagent` application should run automatically but this can be checked with
    ```sh 
	systemctl status tcfagent
	```

3. If the agent is not running, check whether `agent` is located inside `usr/bin`.
   You can run it manually there. To perform auto-start on boot, have a look at the start-up 
   application section.

# Debugging the software via Flatsat PC

Open SSH connection to flatsat PC:

```sh
ssh eive@flatsat.eive.absatvirt.lw
```

or

```sh
ssh eive@2001:7c0:2018:1099:babe:0:e1fe:f1a5
```

or 

```sh
ssh eive@192.168.199.227
```

If the static IP address of the Q7S has already been set,
you can access it with ssh

```sh
ssh root@192.168.133.10
```

If this has not been done yet, you can access the serial
console of the Q7S like this to set it

```sh
picocom -b 115200 /dev/ttyUSB0
```

If the serial port is blocked for some reason, you can kill 
the process using it with `q7s_kill`.

You can use `AltGr` + `X` to exit the picocom session.

To debug an application, first make sure a static IP address is assigned to the Q7S. Run ifconfig
on the Q7S serial console.

```sh
ifconfig
```

Set IP address and netmask with

```sh
ifconfig eth0 192.168.133.10
ifconfig eth0 netmask 255.255.255.0
```

To launch application from Xilinx SDK setup port fowarding on the development machine
(not on the flatsat!)

```sh
ssh -L 1534:192.168.133.10:1534 eive@2001:7c0:2018:1099:babe:0:e1fe:f1a5 -t bash
```

This forwards any requests to localhost:1534 to the port 1534 of the Q7S with the IP address
192.168.133.10.
This needs to be done every time, so it is recommended to create an alias to do this quickly.

Note: When now setting up a debug session in the Xilinx SDK or Eclipse, the host must be set 
to localhost instead of the IP address of the Q7S.

# Transfering files via SCP

To transfer files from the local machine to the Q7S, use port forwarding

```sh
ssh -L 1535:192.168.133.10:22 eive@2001:7c0:2018:1099:babe:0:e1fe:f1a5
```

An `example` file can be copied like this

```sh
scp -P 1535 example root@localhost:/tmp
```

Copying a file from Q7S to flatsat PC 
````
scp -P 22 root@192.168.133.10:/tmp/kernel-config /tmp
````

From a windows machine files can be copied with putty tools (note: use IPv4 address)
````
pscp -scp -P 22 eive@192.168.199.227:</directory-to-example-file/>/example-file </windows-machine-path/>
````

# Launching an application at start-up

Load the root partiton from the flash memory (there are to nor-flash memories and each flash holds
two xdi images). Note: It is not possible to modify the currently loaded root partition, e.g.
creating directories. To do this, the parition needs to be mounted.

1. Disable write protection of the desired root partition

   ```sh
   writeprotect 0 0 0 # unlocks nominal image on nor-flash 0  
   ```

2. Mount the root partition

   ```sh
   xsc_mount_copy 0 0 # Mounts the nominal image from nor-flash 0
   ```
   The mounted partition will be located inside the `/tmp` folder
   
3. Copy the executable to `/usr/bin`

4. Make sure the permissions to execute the application are set

   ```sh
   chmod +x application
   ```
   
5. Create systemd service in /lib/systemd/system. The following shows an example service.

   ```sh
   cat > example.service
   [Unit]
   Description=Example Service
   StartLimitIntervalSec=0

   [Service] 
   Type=simple
   Restart=always
   RestartSec=1
   User=root
   ExecStart=/usr/bin/application

   [Install]
   WantedBy=multi-user.target
   ```
6. Enable the service. This is normally done with systemctl enable. However, this is not possible
   when the service is created for a mounted root partition. Therefore create a symlink as follows.
   ```sh
   ln -s '/tmp/the-mounted-xdi-image/lib/systemd/system/example.service' '/tmp/the-mounted-xdi-image/etc/systemd/system/multi-user.target.wants/example.service'
   ```
   
7. The modified root partition is written back when the partion is locked again. 
   ```sh
   writeprotect 0 0 1 
   ```
8. Now verify the application start by booting from the modified image
   ```sh
   xsc_boot_copy 0 0
   ````
   
9. After booting verify if the service is running 
   ```sh
   systemctl status example
   ```

More detailed information about the used q7s commands can be found in the Q7S user manual.

## Setting up UNIX environment for real-time functionalities

Please note that on most UNIX environments (e.g. Ubuntu), the real time functionalities 
used by the UNIX pthread module are restricted, which will lead to permission errors when creating
these tasks and configuring real-time properites like scheduling priorities.

To solve this issues, try following steps:

1. Edit the /etc/security/limits.conf 
file and add following lines at the end:
```sh
<username>   hard   rtprio  99
<username>   soft   rtprio  99
```
The soft limit can also be set in the console with `ulimit -Sr` if the hard
limit has been increased, but it is recommended to add it to the file as well for convenience.
If adding the second line is not desired for security reasons,
the soft limit needs to be set for each session. If using an IDE like eclipse 
in that case, the IDE needs to be started from the console after setting
the soft limit higher there. After adding the two lines to the file,
the computer needs to be restarted.

It is also recommended to perform the following change so that the unlockRealtime
script does not need to be run anymore each time. The following steps
raise the maximum allowed message queue length to a higher number permanently, which is 
required for some framework components. The recommended values for the new message
length is 130.

2. Edit the /etc/sysctl.conf file

   ```sh
   sudo nano /etc/sysctl.conf
   ```

   Append at end: 
   ```sh
   fs/mqueue/msg_max = <newMsgMaxLen>
   ```
   
   Apply changes with: 
   ```sh
   sudo sysctl -p
   ```

   A possible solution which only persists for the current session is
   ```sh
   echo <newMsgMax> | sudo tee /proc/sys/fs/mqueue/msg_max
   ```

# PCDU

Connect to serial console of P60 Dock
````
picocom -b 500000 /dev/ttyUSBx
````
General information
````
cmp ident
````
List parameter table:
x values: 1,2 or 4
````
param list x
````
Table 4 lists HK parameters
Changing parameters
First switch to table where parameter shall be changed (here table id is 1)
````
p60-dock # param mem 1
p60-dock # param set out_en[0] 1
p60-dock # param get out_en[0]
GET out_en[0] = 1
````

# Debugging the software (when workstation is directly conncected to Q7S)

1. Assign static IP address to Q7S
	* Open serial console of Q7S (Accessible via the micro-USB of the PIM, see also Q7S user
   manual chapter 10.3)
	* Baudrate 115200
	* Login to Q7S:
		* user: root
		* pw: root
	
2. Connect Q7S to workstation via ethernet
3. Make sure the netmask of the ehternet interface of the workstation matches the netmask of the Q7S
	* When IP address is set to 192.168.133.10 and the netmask is 255.255.255.0, an example IP address for the workstation
	  is 192.168.133.2
	  
4. Run tcf-agent on Q7S

	* Tcf-agent is not yet integrated in the rootfs of the Q7S. Therefore build tcf-agent manually
	
    ```sh
    git clone git://git.eclipse.org/gitroot/tcf/org.eclipse.tcf.agent.git
    cd org.eclipse.tcf.agent/agent
    make CC=arm-linux-gnueabihf-gcc LD=arm-linux-gnueabihf-ld MACHINE=arm NO_SSL=1 NO_UUID=1
    ```

	* Transfer executable agent from org.eclipse.tcf.agent/agent/obj/GNU/Linux/arm/Debug to /tmp of Q7S
	
    ```sh
    cd obj/GNU/Linux/arm/Debug
    scp agent root@192.168.133.10:/tmp
    ```

	* On Q7S 
    ```sh
    cd /tmp
    chmod +x agent
    ```

	* Run agent
    ```sh
    ./agent
    ```

5. In Xilinx SDK 2018.2 right click on project &rarr; Debug As &rarr; Debug Configurations
6. Right click Xilinx C/C++ applicaton (System Debugger) &rarr; New &rarr; 
7. Set Debug Type to Linux Application Debug and Connectin to Linux Agent
8. Click New
9. Give connection a name
10. Set Host to static IP address of Q7S. e.g. 192.168.133.10
11. Test connection (This ensures the TCF Agent is running on the Q7S)
12. Select Application tab
	* Project Name: eive_obsw
	* Local File Path: Path to eiveobsw-linux.elf (in `_bin\linux\devel`)
	* Remote File Path: `/tmp/eive_obsw.elf`

# Running cppcheck on the Software

Static code analysis can be useful to find bugs.
`cppcheck` can be used for this purpose. On Windows you can use MinGW64 to do this.

```sh
pacman -S mingw-w64-x86_64-cppcheck
```

On Ubuntu, install with

```sh
sudo apt-get install cppcheck
```

You can use the Eclipse integration or you can perform the scanning manually from the command line.
CMake will be used for this.

Run the CMake build generation commands specified above but supply
`-DCMAKE_EXPORT_COMPILE_COMMANDS=ON` to the build generation. Invoking the build command will
generate a `compile_commands.json` file which can be used by cppcheck.

```sh
cppcheck --project=compile_commands.json --xml 2> report.xml
```

Finally, you can convert the generated `.xml` file to HTML with the following command

```sh
cppcheck-htmlreport --file=report.xml --report-dir=cppcheck --source-dir=..
```

# Special notes on Eclipse

When using Eclipse, there are two special build variables in the project properties
&rarr; C/C++ Build &rarr; Build Variables called `Q7S_SYSROOT` or `RPI_SYSROOT`. You can set 
the sysroot path in those variables to get any additional includes like `gpiod.h` in the 
Eclipse indexer.

# Q7S Utilities and Troubleshooting

## pa3tool Host Tool

The `pa3tool` is a host tool to interface with the ProASIC3 on the Q7S board. It was
installed on the clean room PC but it can also be found 
[on the Traq platform](https://trac2.xiphos.ca/manual/attachment/wiki/WikiStart/libpa3-1.3.4.tar.gz).

For more information, see Q7S datasheet.

## Creating files with cat and echo

The only folder which can be written in the root filesystem is the `tmp` folder.

You can create a simple file with initial content with `echo`

```sh
echo "Hallo Welt" > /tmp/test.txt
cat /tmp/test.txt
```

For more useful combinations, see this [link](https://www.freecodecamp.org/news/the-cat-command-in-linux-how-to-create-a-text-file-with-cat-or-touch/).

## Using `system` when debugging

Please note that when using a `system` call in C++/C code and debugging, a new thread will be
spawned which will appear on the left in Eclipse or Xilinx SDK as a `sh` program. 
The debugger might attach to this child process automatically, depending on debugger configuration,
and the process needs to be selected and continued/started manually. You can enable or disable
this behaviour by selecting or deselecting the `Attach Process Children` option in the Remote
Application Configuration for the TCF plugin like shown in the following picture

<img src="https://egit.irs.uni-stuttgart.de/eive/eive-obsw/raw/branch/develop/doc/img/ProcessSettings.png" width="50%"> <br>

## Libgpiod

Detect all gpio device files:
````
gpiodetect
````
Get info about a specific gpio group:
````
gpioinfo <name of gpio group>
````
The following sets the gpio 18 from gpio group gpiochip7 to high level.
````
gpioset gpiochip7 18=1
````
Setting the gpio to low.
````
gpioset gpiochip7 18=0
````
Show options for setting gpios.
````
gpioset -h
```` 
To get the state of a gpio:
````
gpioget <gpiogroup> <offset>
````
Example to get state:
gpioget gpiochip7 14

Both the MIOs and EMIOs can be accessed via the zynq_gpio instance which
comprises 118 pins (54 MIOs and 64 EMIOs).

## Xilinx UARTLIE

Get info about ttyUL* devices
````
cat /proc/tty/driver
````

## I2C

Getting information about I2C device
````
ls /sys/class/i2c-dev/i2c-0/device/device/driver
````
This shows the memory mapping of /dev/i2c-0

## CAN

```sh
ip link set can0 down
ip link set can0 type can loopback off
ip link set can0 up type can bitrate 1000000
```
   
Following command sends 8 bytes to device with id 99 (for petalinux)
````
cansend can0 -i99 99 88 77 11 33 11 22 99
````
For Q7S use this:
````
cansend can0 5A1#11.22.33.44.55.66.77.88
````
Turn loopback mode on:
````
ip link set can0 type can bitrate 1000000 loopback on 
````
Reading data from CAN:
````
candump can0
````

## Useful Q7S Linux Commands

Rebooting currently running image:

```sh
xsc_boot_copy -r
```

# Running the EIVE OBSW on a Raspberry Pi

Special section for running the EIVE OBSW on the Raspberry Pi.
The Raspberry Pi build uses the `bsp_rpi` BSP folder, and a very similar cross-compiler.

For running the software on a Raspberry Pi, it is recommended to follow the steps specified in 
[the fsfw example](https://egit.irs.uni-stuttgart.de/fsfw/fsfw_example/src/branch/mueller/master/doc/README-rpi.md#top) 
and using the TCF agent to have a similar set-up process also required for the Q7S.
You should run the following command first on your Raspberry Pi

```sh
sudo apt-get install gpiod libgpiod-dev
```

to install the required GPIO libraries before cloning the system root folder.

# Flight Software Framework (FSFW)

An EIVE fork of the FSFW is submodules into this repository.
To add the master upstream branch and merge changes and updates from it 
into the fork, run the following command in the fsfw folder first:

```sh
git remote add upstream https://egit.irs.uni-stuttgart.de/fsfw/fsfw.git
git remote update --prune
```

After that, an update can be merged by running

```sh 
git merge upstream/master
```

Alternatively, changes from other upstreams (forks) and branches can be merged like that in the same way.