import xml.etree.ElementTree as eT import numpy as np import astropy.units as u from astropy.constants import c import os from ..lib.helpers import readCSV from ..lib.logger import logger from .Entry import Entry from ..classes import target as tg from ..classes import optical_component as oc from ..classes import sensor as sensor import difflib import os.path from typing import Union class Configuration(object): """ A Class to parse the XML configuration file. Adapted from ExoSim (https://github.com/ExoSim/ExoSimPublic) Attributes ---------- conf : Entry Parsed configuration file as Entry-tree """ conf = None def __init__(self, file="esbo-etc_defaults.xml"): """ Parse a XML configuration file. Parameters ---------- file : str configuration file to parse """ # Check if configuration file exists if not os.path.exists(file): logger.error("Configuration file '" + file + "' doesn't exist.") # Read configuration file logger.info("Reading configuration from file '" + file + "'.") self.conf = self.__parser(eT.parse(file).getroot()) self.__check_config() self.__calc_metaoptions() def __parser(self, parent: eT.Element): """ Parse a XML element tree to an Entry-tree Parameters ---------- parent : xml.etree.ElementTree.Element The parent XML tree to be parsed Returns ------- obj : Entry The parsed XML tree """ # Initialize empty Entry object obj = Entry() for child in parent: # recursively parse children of child element parsed_child = self.__parser(child) # parse attributes of child element parsed_child.parse(child) # Add or append the parsed child to the prepared Entry object if hasattr(obj, child.tag): if isinstance(getattr(obj, child.tag), list): getattr(obj, child.tag).append(parsed_child) else: setattr(obj, child.tag, [getattr(obj, child.tag), parsed_child]) else: setattr(obj, child.tag, parsed_child) return obj def __calc_metaoptions(self): """ Calculate additional attributes e.g. the wavelength grid """ self.__calc_metaoption_wl_delta() def __calc_metaoption_wl_delta(self): """ Calculate the wavelength grid used for the calculations. """ if hasattr(self.conf.common, "wl_delta"): wl_delta = self.conf.common.wl_delta() else: if self.conf.common.res().unit == u.dimensionless_unscaled: wl_delta = (self.conf.common.wl_min() + self.conf.common.wl_max()) / (2 * self.conf.common.res()) else: wl_delta = (self.conf.common.wl_min() + self.conf.common.wl_max()) / ( 2 * c / self.conf.common.res()).decompose() setattr(self.conf.common, 'wl_delta', Entry(val=wl_delta)) setattr(self.conf.common, 'wl_bins', Entry(val=np.append(np.arange(self.conf.common.wl_min().to(u.nm).value, self.conf.common.wl_max().to(u.nm).value, wl_delta.to(u.nm).value), self.conf.common.wl_max().to(u.nm).value) << u.nm)) def __check_config(self): """ Check and fix the parsed configuration file. """ # Check common if not hasattr(self.conf, "common"): logger.error("Configuration check: Missing required container 'common'.") if not hasattr(self.conf.common, "wl_min"): logger.error("Configuration check: common: Missing required container 'wl_min'.") mes = self.conf.common.wl_min.check_quantity("val", u.m) mes is not None and logger.error("Configuration check: common -> wl_min: " + mes) if not hasattr(self.conf.common, "wl_max"): logger.error("Configuration check: common: Missing required container 'wl_max'.") mes = self.conf.common.wl_max.check_quantity("val", u.m) mes is not None and logger.error("Configuration check: common -> wl_max: " + mes) if hasattr(self.conf.common, "wl_delta"): mes = self.conf.common.wl_delta.check_quantity("val", u.m) mes is not None and logger.error("Configuration check: common -> wl_delta: " + mes) elif hasattr(self.conf.common, "res"): mes = self.conf.common.res.check_quantity("val", u.dimensionless_unscaled) if mes is not None: mes = self.conf.common.res.check_quantity("val", u.m / u.s) mes is not None and logger.error("Configuration check: common -> res: " + mes) else: logger.error( "Configuration check: common: Expected one of the containers 'wl_delta' or 'res' but got none.") if not hasattr(self.conf.common, "d_aperture"): logger.error("Configuration check: common: Missing required container 'd_aperture'.") mes = self.conf.common.d_aperture.check_quantity("val", u.m) mes is not None and logger.error("Configuration check: common -> d_aperture: " + mes) if hasattr(self.conf.common, "psf"): if hasattr(self.conf.common.psf, "type"): if self.conf.common.psf.type.lower() != "airy": mes = self.conf.common.psf.check_file("val") mes is not None and logger.error("Configuration check: common -> psf: " + mes) else: logger.error("Configuration check: common -> psf: Missing required parameter 'type'.") if hasattr(self.conf.common.psf, "osf"): mes = self.conf.common.psf.check_float("osf") mes is not None and logger.error("Configuration check: common -> psf: " + mes) else: setattr(self.conf.common.psf, "osf", 10 * u.dimensionless_unscaled) else: setattr(self.conf.common, "psf", Entry(val="Airy", osf=10 * u.dimensionless_unscaled)) if hasattr(self.conf.common, "jitter_sigma"): mes = self.conf.common.jitter_sigma.check_quantity("val", u.arcsec) mes is not None and logger.error("Configuration check: common -> jitter_sigma: " + mes) if hasattr(self.conf.common, "output_path"): if hasattr(self.conf.common.output, "val"): mes = self.conf.common.output.check_path("path") mes is not None and logger.error("Configuration check: common -> output: " + mes) else: setattr(self.conf.common.output, "val", ".") if hasattr(self.conf.common.output, "format"): mes = self.conf.common.output.check_selection("format", ["csv", "CSV", "fits", "FITS"]) mes is not None and logger.error("Configuration check: common -> output: " + mes) else: setattr(self.conf.common.output, "format", "CSV") else: setattr(self.conf.common, "output_path", Entry(val=".", format="csv")) if hasattr(self.conf.common, "exposure_time"): mes = self.conf.common.exposure_time.check_quantity("val", u.s) if mes is not None: mes = self.conf.common.exposure_time.check_file("val") mes is not None and logger.error("Configuration check: common -> exposure_time: " + mes) self.conf.common.exposure_time.val = readCSV(self.conf.common.exposure_time.val, [u.s], format_="csv").columns[0].quantity if hasattr(self.conf.common, "snr"): mes = self.conf.common.snr.check_quantity("val", u.dimensionless_unscaled) if mes is not None: mes = self.conf.common.snr.check_file("val") mes is not None and logger.error("Configuration check: common -> snr: " + mes) self.conf.common.snr.val = readCSV(self.conf.common.snr.val, [u.dimensionless_unscaled], format_="csv").columns[0].quantity if hasattr(self.conf.common, "exposure_time") and \ self.conf.common.snr.val.size != self.conf.common.exposure_time.val.size: logger.error( "Configuration check: common -> snr: Length of exposure time (%d) not matching the length of " "the SNR (%d)" % (self.conf.common.exposure_time.val.size, self.conf.common.snr.val.size)) if not (hasattr(self.conf.common, "exposure_time") or hasattr(self.conf.common, "snr")): logger.error("Configuration check: common: Expected at least one of the containers 'exposure_time' or " + "'snr' but got none.") # Check astroscene if not hasattr(self.conf, "astroscene"): logger.error("Configuration check: Missing required container 'astroscene'.") if not hasattr(self.conf.astroscene, "target"): logger.error("Configuration check: astroscene: Missing required container 'target'.") if not hasattr(self.conf.astroscene.target, "type"): logger.error("Configuration check: astroscene -> target: Missing required parameter 'type'.") if self.conf.astroscene.target.type not in dir(tg): # noinspection PyTypeChecker logger.error("Configuration check: astroscene -> target: Target type '" + self.conf.astroscene.target.type + "' does not exist. Did you mean '" + difflib.get_close_matches(self.conf.astroscene.target.type, dir(tg), 1)[0] + "'?") mes = getattr(tg, self.conf.astroscene.target.type).check_config(self.conf.astroscene.target) mes is not None and logger.error("Configuration check: astroscene -> target: " + mes) if hasattr(self.conf.common, "exposure_time") and hasattr(self.conf.common, "snr"): if self.conf.astroscene.target.type.lower() != "blackbodytarget": logger.error("Configuration check: astroscene -> target: Sensitivity calculation only possible for " + "a target of the type 'BlackBodyTarget'.") mes = self.__check_optical_components(self.conf.astroscene) mes is not None and logger.error("Configuration check: astroscene -> " + mes) # Check common_optics if hasattr(self.conf, "common_optics") and isinstance(self.conf.common_optics, Entry): mes = self.__check_optical_components(self.conf.common_optics) mes is not None and logger.error("Configuration check: common_optics -> " + mes) # Check instrument if not hasattr(self.conf, "instrument"): logger.error("Configuration check: Missing required container 'instrument'.") mes = self.__check_optical_components(self.conf.instrument) mes is not None and logger.error("Configuration check: instrument -> " + mes) if not hasattr(self.conf.instrument, "sensor"): logger.error("Configuration check: instrument: Missing required container 'sensor'.") if not hasattr(self.conf.instrument.sensor, "type"): logger.error("Configuration check: instrument -> sensor: Missing required parameter 'type'.") if self.conf.instrument.sensor.type not in dir(sensor): # noinspection PyTypeChecker logger.error("Configuration check: instrument -> sensor: Sensor type '" + self.conf.instrument.sensor.type + "' does not exist. Did you mean '" + difflib.get_close_matches(self.conf.instrument.sensor.type, dir(sensor), 1)[0] + "'?") mes = getattr(sensor, self.conf.instrument.sensor.type).check_config(self.conf.instrument.sensor, self.conf) mes is not None and logger.error("Configuration check: instrument -> sensor -> " + mes) @staticmethod def __check_optical_components(conf: Union[Entry, list]) -> Union[None, str]: """ Check list of optical components in the parsed configuration. Parameters ---------- conf : Union[Entry, list] The configuration entry or the list of configuration entries of the optical components to be checked. Returns ------- mes : Union[None, str] The error message of the check. This will be None if the check was successful. """ if hasattr(conf, "optical_component"): for component in ( conf.optical_component if type(conf.optical_component) == list else [conf.optical_component]): if hasattr(component, "type"): if component.type not in dir(oc): # noinspection PyTypeChecker return "optical_component: optical component type '" + component.type + \ "' does not exist. Did you mean '" + \ difflib.get_close_matches(component.type, dir(tg), 1)[0] + "'?" mes = getattr(oc, component.type).check_config(component) if mes is not None: print(component.type) print(mes) return "optical_component -> " + component.type + ": " + mes else: return "optical_component: Missing required parameter 'type'."