209 lines
8.9 KiB
Python
209 lines
8.9 KiB
Python
from esbo_etc.lib.helpers import error
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from scipy.interpolate import interp1d
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import astropy.units as u
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import math
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from typing import Union
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import logging
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class SpectralQty:
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"""
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A class to hold and work with spectral quantities
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"""
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def __init__(self, wl: u.Quantity, qty: u.Quantity, extrapolate: bool = False):
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"""
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Initialize a new spectral quantity
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Parameters
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----------
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wl : Quantity
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The binned wavelengths
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qty : Quantity
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The quantity values corresponding to the binned wavelengths. If the values are supplied without a unit,
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they are assumed to be dimensionless.
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"""
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# Check if both lengths are equal
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if len(wl) == len(qty):
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# check if units are given. If not, add a dimensionless unit
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if hasattr(wl, "unit"):
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self.wl = wl
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else:
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self.wl = wl * u.dimensionless_unscaled
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if hasattr(qty, "unit"):
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self.qty = qty
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else:
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self.qty = qty * u.dimensionless_unscaled
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else:
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error("Lengths not matching")
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self._extrapolate = extrapolate
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def __eq__(self, other) -> bool:
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"""
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Check if this object is equal to another object
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Parameters
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----------
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other : SpectralQty
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Object to compare with
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Returns
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-------
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res : bool
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Result of the comparison
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"""
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return self.wl.unit == other.wl.unit and self.qty.unit == other.qty.unit and \
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len(self.wl) == len(other.wl) and len(self.qty) == len(other.qty) and \
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all([math.isclose(x, y, rel_tol=1e-5) for x, y in zip(self.wl.value, other.wl.value)]) and \
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all([math.isclose(x, y, rel_tol=1e-5) for x, y in zip(self.qty.value, other.qty.value)])
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def __add__(self, other: Union[int, float, u.Quantity, "SpectralQty"]):
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"""
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Calculate the sum with another object
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Parameters
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----------
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other : Union[int, float, u.Quantity, "SpectralQty"]
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Addend to be added to this object. If the binning of the object on the right hand side differs
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from the binning of the left object, the object on the right hand side will be rebinned.
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Returns
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-------
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sum : SpectralQty
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The sum of both objects
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"""
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# Summand is of type int or float, use same unit
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if isinstance(other, int) or isinstance(other, float):
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return SpectralQty(self.wl, self.qty + other * self.qty.unit)
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# Summand is of type Quantity
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elif isinstance(other, u.Quantity):
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if other.unit == self.qty.unit:
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return SpectralQty(self.wl, self.qty + other)
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else:
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raise TypeError("Units are not matching for addition.")
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# Summand is of type SpectralQty
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else:
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if other.wl.unit.is_equivalent(self.wl.unit) and other.qty.unit.is_equivalent(self.qty.unit):
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# Wavelengths are matching, just add the quantities
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if len(self.wl) == len(other.wl) and all(self.wl == other.wl):
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return SpectralQty(self.wl, self.qty + other.qty)
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# Wavelengths are not matching, rebinning needed
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else:
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# Rebin addend
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other_rebinned = other.rebin(self.wl)
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if len(self.wl) == len(other_rebinned.wl) and all(self.wl == other_rebinned.wl):
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return SpectralQty(self.wl, self.qty + other_rebinned.qty)
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else:
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# Wavelengths are still not matching as extrapolation is disabled, rebin this spectral quantity
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return SpectralQty(other_rebinned.wl, self.rebin(other_rebinned.wl).qty + other_rebinned.qty)
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else:
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error("Units are not matching for addition.")
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__radd__ = __add__
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def __sub__(self, other: Union[int, float, u.Quantity, "SpectralQty"]):
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"""
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Calculate the difference to another object
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Parameters
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----------
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other : Union[int, float, u.Quantity, "SpectralQty"]
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Subtrahend to be subtracted from this object. If the binning of the object on the right hand side differs
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from the binning of the left object, the object on the right hand side will be rebinned.
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Returns
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-------
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sum : SpectralQty
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The difference of both objects
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"""
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# Subtrahend is of type int or float, use same unit
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if isinstance(other, int) or isinstance(other, float):
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return SpectralQty(self.wl, self.qty - other * self.qty.unit)
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# Subtrahend is of type Quantity
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elif isinstance(other, u.Quantity):
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if other.unit == self.qty.unit:
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return SpectralQty(self.wl, self.qty - other)
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else:
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raise TypeError('Units are not matching for subtraction.')
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# Subtrahend is of type SpectralQty
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else:
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if other.wl.unit.is_equivalent(self.wl.unit) and other.qty.unit.is_equivalent(self.qty.unit):
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# Wavelengths are matching, just subtract the quantities
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if len(self.wl) == len(other.wl) and all(self.wl == other.wl):
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return SpectralQty(self.wl, self.qty - other.qty)
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# Wavelengths are not matching, rebinning needed
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else:
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# Rebin subtrahend
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other_rebinned = other.rebin(self.wl)
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if len(self.wl) == len(other_rebinned.wl) and all(self.wl == other_rebinned.wl):
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return SpectralQty(self.wl, self.qty - other_rebinned.qty)
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else:
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# Wavelengths are still not matching as extrapolation is disabled, rebin this spectral quantity
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return SpectralQty(other_rebinned.wl, self.rebin(other_rebinned.wl).qty - other_rebinned.qty)
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else:
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error("Units are not matching for substraction.")
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def __mul__(self, other: Union[int, float, u.Quantity, "SpectralQty"]):
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"""
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Calculate the product with another object
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Parameters
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----------
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other : Union[int, float, u.Quantity, "SpectralQty"]
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Factor to be multiplied with this object. If the binning of the object on the right hand side differs
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from the binning of the left object, the object on the right hand side will be rebinned.
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Returns
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-------
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sum : SpectralQty
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The product of both objects
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"""
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# Factor is of type int, float or Quantity, just multiply
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if isinstance(other, int) or isinstance(other, float) or isinstance(other, u.Quantity):
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return SpectralQty(self.wl, self.qty * other)
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# Factor is of type SpectralQty
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else:
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if other.wl.unit.is_equivalent(self.wl.unit):
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# Wavelengths are matching, just multiply the quantities
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if len(self.wl) == len(other.wl) and all(self.wl == other.wl):
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return SpectralQty(self.wl, self.qty * other.qty)
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# Wavelengths are not matching, rebinning needed
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else:
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# Rebin factor
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other_rebinned = other.rebin(self.wl)
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if len(self.wl) == len(other_rebinned.wl) and all(self.wl == other_rebinned.wl):
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return SpectralQty(self.wl, self.qty * other_rebinned.qty)
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else:
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# Wavelengths are still not matching as extrapolation is disabled, rebin this spectral quantity
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return SpectralQty(other_rebinned.wl, self.rebin(other_rebinned.wl).qty * other_rebinned.qty)
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else:
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error("Units are not matching for multiplication.")
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__rmul__ = __mul__
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def rebin(self, wl: u.Quantity) -> "SpectralQty":
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"""
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Resample the spectral quantity sqty(wl) over the new grid wl, rebinning if necessary, otherwise interpolates.
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Copied from ExoSim (https://github.com/ExoSim/ExoSimPublic).
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Parameters
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----------
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wl : Quantity
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new binned wavelengths
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Returns
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-------
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sqty : SpectralQty
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The rebinned spectral quantity
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"""
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if wl.unit != self.wl.unit:
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error("Mismatching units for rebinning: " + wl.unit + ", " + self.wl.unit)
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if not self._extrapolate:
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if min(wl) < min(self.wl) or max(wl) > max(self.wl):
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logging.warning("Extrapolation disabled, bandwidth will be reduced.")
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# Remove new wavelengths where extrapolation would have been necessary
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wl = [x.value for x in wl if min(self.wl) <= x <= max(self.wl)] * wl.unit
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f = interp1d(self.wl, self.qty.value, fill_value="extrapolate")
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return SpectralQty(wl, f(wl.to(self.wl.unit)) * self.qty.unit)
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